Digital Epidemiology

Salathé M, Bengtsson L, Bodnar TJ, Brewer DD, Brownstein JS, et al., PLOS Comput. Biol. 8(7): e1002616 (2012)

Mobile, social, real-time: the ongoing revolution in the way people
communicate has given rise to a new kind of epidemiology. Digital data
sources, when harnessed appropriately, can provide local and timely
information about disease and health dynamics in populations around the world.
The rapid, unprecedented increase in the availability of relevant data from
various digital sources creates considerable technical and computational challenges.

URL: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002616

BIBTEX:

@article{10.1371/journal.pcbi.1002616,
  author = {Salathé, Marcel and Bengtsson, Linus and Bodnar, Todd J.
    and Brewer, Devon D. and Brownstein, John S. and Buckee, Caroline
    and Campbell, Ellsworth M. and Cattuto, Ciro and Khandelwal, Shashank
    and Mabry, Patricia L. and Vespignani, Alessandro},
  journal = {PLOS Computational Biology},
  publisher = {Public Library of Science},
  title = {Digital Epidemiology},
  year = {2012},
  month = {07},
  volume = {8},
  url = {http://dx.doi.org/10.1371%2Fjournal.pcbi.1002616},
  pages = {e1002616},
  number = {7},
  doi = {10.1371/journal.pcbi.1002616},
  keywords = {SocioPatterns, Epidemiology}
}

PUBLICATIONS

Impact of contact data resolution on the evaluation of interventions in mathematical models of infectious diseases
Screening and vaccination against COVID-19 to minimise school closure: a modelling study
Group interactions modulate critical mass dynamics in social convention
Association networks and social temporal dynamics in ewes and lambs
From temporal network data to the dynamics of social relationships
Using wearable proximity sensors to characterize social contact patterns in a village of rural Malawi
Building surrogate temporal network data from observed backbones
Effect of manual and digital contact tracing on COVID-19 outbreaks: a study on empirical contact data
Predicting partially observed processes on temporal networks by Dynamics-Aware Node Embeddings (DyANE)
Digital proximity tracing on empirical contact networks for pandemic control
Span-core Decomposition for Temporal Networks: Algorithms and Applications
Relevance of temporal cores for epidemic spread in temporal networks
Measuring social networks in primates: wearable sensors versus direct observations
The effect of age, environment and management on social contact patterns in sheep
High-resolution contact networks of free-ranging domestic dogs Canis familiaris and implications for transmission of infection
Simplicial models of social contagion
Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors
Wearable Proximity Sensors for Monitoring a Mass Casualty Incident Exercise: Feasibility Study
The structured backbone of temporal social ties
Mining (maximal) span-cores from temporal networks
Estimating the outcome of spreading processes on networks with incomplete information: A dimensionality reduction approach
Close encounters between infants and household members measured through wearable proximity sensors
Can co-location be used as a proxy for face-to-face contacts?
Effect of risk perception on epidemic spreading in temporal networks
Estimating the epidemic risk using non-uniformly sampled contact data
Robust modeling of human contact networks across different scales and proximity-sensing techniques
Finding Collaboration Partners in a Scientific Community: The Role of Cognitive Group Awareness, Career Level, and Disciplinary Background
Recalibrating disease parameters for increasing realism in modeling epidemics in closed settings
School closure policies at municipality level for mitigating influenza spread: a model-based evaluation
Contact diaries versus wearable proximity sensors in measuring contact patterns at a conference: method comparison and participants’ attitudes
Impact of spatially constrained sampling of temporal contact networks on the evaluation of the epidemic risk
How to Estimate Epidemic Risk from Incomplete Contact Diaries Data?
Quantifying social contacts in a household setting of rural Kenya using wearable proximity sensors
Epidemic risk from friendship network data: an equivalence with a non-uniform sampling of contact networks
Compensating for population sampling in simulations of epidemic spread on temporal contact networks
Enhancing the evaluation of pathogen transmission risk in a hospital by merging hand-hygiene compliance and contact data: a proof-of-concept study
Contact patterns in a high school: a comparison between data collected using wearable sensors, contact diaries and friendship surveys
Data on face-to-face contacts in an office building suggest a low-cost vaccination strategy based on community linkers
Is Web Content a Good Proxy for Real-Life Interaction? A Case Study Considering Online and Offline Interactions of Computer Scientists
Combining High-Resolution Contact Data with Virological Data to Investigate Influenza Transmission in a Tertiary Care Hospital
Mental health and social networks in early adolescence: A dynamic study of objectively-measured social interaction behaviors
Mitigation of infectious disease at school: targeted class closure vs school closure
How memory generates heterogeneous dynamics in temporal networks
Contact patterns among high school students
Detecting the Community Structure and Activity Patterns of Temporal Networks: A Non-Negative Tensor Factorization Approach
Measuring contact patterns with wearable sensors: methods, data characteristics and applications to data-driven simulations of infectious diseases
Bootstrapping under constraint for the assessment of group behavior in human contact networks
Immunization strategies for epidemic processes in time-varying contact networks
Activity clocks: spreading dynamics on temporal networks of human contact
Gender homophily from spatial behavior in a primary school: a sociometric study
Estimating Potential Infection Transmission Routes in Hospital Wards Using Wearable Proximity Sensors
Empirical temporal networks of face-to-face human interactions
New Insights and Methods for Predicting Face-To-Face Contacts
Time-varying Social Networks in a Graph Database – A Neo4j Use Case
Temporal networks of face-to-face human interactions
An infectious disease model on empirical networks of human contact: bridging the gap between dynamic network data and contact matrices
Fingerprinting temporal networks of close-range human proximity
Digital Epidemiology
Random Walks on Temporal Networks
The making of Sixty-Nine Days Of Close Encounters At The Science Gallery.
High-Resolution Measurements of Face-to-Face Contact Patterns in a Primary School.
Simulation of an SEIR Infectious Disease Model on the Dynamic Contact Network of Conference Attendees.
On the Dynamics of Human Proximity for Data Diffusion in Ad-Hoc Networks.
Close Encounters in a Pediatric Ward: Measuring Face-to-Face Proximity and Mixing Patterns with Wearable Sensors.
What’s in a Crowd? Analysis of Face-to-Face Behavioral Networks.
Wearable Sensor Networks for Measuring Face-to-Face Contact Patterns in Healthcare Settings.
Social Dynamics in Conferences: Analysis of Data from the Live Social Semantics Application.
Providing Enhanced Social Interaction Services for Industry Exhibitors at large Medical Conferences.
Dynamics of Person-to-Person Interactions from Distributed RFID Sensor Networks.
Semantics, Sensors, and the Social Web: The Live Social Semantics Experiments.
The Live Social Semantics Application: a Platform for Integrating Face-to-Face Presence with On-Line Social Networking
Live Social Semantics
High Resolution Dynamical Mapping of Social Interactions With Active RFID.